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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0024s0340.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 23977.5 Da PI: 6.1297 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.5 | 3.5e-46 | 13 | 141 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p+G+ FhP+deelv+++L+ k++g + ++ ++i+ev+++++ePw+Lp k ++++++ e+yfFs+r+ ky++++r+nr+tk+gyWk t SapurV1A.0024s0340.1.p 13 PVGYGFHPSDEELVNHFLRLKMRGGSDHVVSTIAEVNVCDFEPWELPgKsAIQSNDPECYFFSPRNYKYSKSQRANRTTKAGYWKGT 99 89************************999999***************6347777888****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 gkd++v+++ +ge++ +k+tLvfy+gr p+g+kt+W+mhey+ SapurV1A.0024s0340.1.p 100 GKDRAVTAEsTGEQIATKRTLVFYSGRVPNGVKTNWIMHEYN 141 *******9888999***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-49 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.017 | 12 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-24 | 13 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTSSTTSFRS AAPVGYGFHP SDEELVNHFL RLKMRGGSDH VVSTIAEVNV CDFEPWELPG 60 KSAIQSNDPE CYFFSPRNYK YSKSQRANRT TKAGYWKGTG KDRAVTAEST GEQIATKRTL 120 VFYSGRVPNG VKTNWIMHEY NPTFDFPNKR DFILYKLKKS PDDTPAFDGG ESSTSNVTEE 180 DVQLRTQLES FNGIDEGDYN LNFALNFTNG NMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4dul_B | 4e-35 | 11 | 141 | 16 | 141 | NAC domain-containing protein 19 |
4dul_A | 4e-35 | 11 | 141 | 16 | 141 | NAC domain-containing protein 19 |
1ut7_B | 4e-35 | 11 | 141 | 16 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-35 | 11 | 141 | 16 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-35 | 11 | 141 | 16 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_A | 4e-35 | 11 | 141 | 16 | 141 | NO APICAL MERISTEM PROTEIN |
3swp_D | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swp_C | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swp_B | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swp_A | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swm_D | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swm_C | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swm_B | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
3swm_A | 4e-35 | 11 | 141 | 19 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 2e-98 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301328.1 | 1e-131 | hypothetical protein POPTR_0002s15560g | ||||
Swissprot | F4JN35 | 2e-49 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | B9GPV5 | 1e-131 | B9GPV5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s15560.1 | 1e-131 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-50 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0024s0340.1.p |