PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0024s0340.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 214aa MW: 23977.5 Da PI: 6.1297

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0024s0340.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.5	3.5e-46	13	141	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p+G+ FhP+deelv+++L+ k++g + ++ ++i+ev+++++ePw+Lp k ++++++ e+yfFs+r+ ky++++r+nr+tk+gyWk t SapurV1A.0024s0340.1.p 13 PVGYGFHPSDEELVNHFLRLKMRGGSDHVVSTIAEVNVCDFEPWELPgKsAIQSNDPECYFFSPRNYKYSKSQRANRTTKAGYWKGT 99 89**********************999999***********6347777888************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 gkd++v+++ +ge++ +k+tLvfy+gr p+g+kt+W+mhey+ SapurV1A.0024s0340.1.p 100 GKDRAVTAEsTGEQIATKRTLVFYSGRVPNGVKTNWIMHEYN 141 ***9888999*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-49	8	159	IPR003441	NAC domain
PROSITE profile	PS51005	47.017	12	160	IPR003441	NAC domain
Pfam	PF02365	6.3E-24	13	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTSSTTSFRS AAPVGYGFHP SDEELVNHFL RLKMRGGSDH VVSTIAEVNV CDFEPWELPG 60 KSAIQSNDPE CYFFSPRNYK YSKSQRANRT TKAGYWKGTG KDRAVTAEST GEQIATKRTL 120 VFYSGRVPNG VKTNWIMHEY NPTFDFPNKR DFILYKLKKS PDDTPAFDGG ESSTSNVTEE 180 DVQLRTQLES FNGIDEGDYN LNFALNFTNG NMS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4dul_B	4e-35	11	141	16	141	NAC domain-containing protein 19
4dul_A	4e-35	11	141	16	141	NAC domain-containing protein 19
1ut7_B	4e-35	11	141	16	141	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-35	11	141	16	141	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-35	11	141	16	141	NO APICAL MERISTEM PROTEIN
1ut4_A	4e-35	11	141	16	141	NO APICAL MERISTEM PROTEIN
3swp_D	4e-35	11	141	19	144	NAC domain-containing protein 19
3swp_C	4e-35	11	141	19	144	NAC domain-containing protein 19
3swp_B	4e-35	11	141	19	144	NAC domain-containing protein 19
3swp_A	4e-35	11	141	19	144	NAC domain-containing protein 19
3swm_D	4e-35	11	141	19	144	NAC domain-containing protein 19
3swm_C	4e-35	11	141	19	144	NAC domain-containing protein 19
3swm_B	4e-35	11	141	19	144	NAC domain-containing protein 19
3swm_A	4e-35	11	141	19	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182673	2e-98	AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301328.1	1e-131	hypothetical protein POPTR_0002s15560g
Swissprot	F4JN35	2e-49	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	B9GPV5	1e-131	B9GPV5_POPTR; Uncharacterized protein
STRING	POPTR_0002s15560.1	1e-131	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-50	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	SapurV1A.0024s0340.1.p